GgaALTA1023358-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000005073 | PDC
Description
phosducin [Source:HGNC Symbol;Acc:HGNC:8759]
Coordinates
chr8:9892726-9908074:+
Coord C1 exon
chr8:9892726-9892808
Coord A exon
chr8:9907984-9907990
Coord C2 exon
chr8:9907991-9908074
Length
7 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
TTTTTGTTTTCTTTTTTGAGTCT
3' ss Score
0.23
Exon sequences
Seq C1 exon
TTGTAATCCAGCTCCCCTACTGGAAACCTTCAAGGGCATTTGTCAACGCTTGAAAAAAGAAGAGTTGAGCGACTGAACCTCAG
Seq A exon
TCTGCAG
Seq C2 exon
CATCTCCTACTCCAGTCACCAAAATGGAAGAAAATGCAAACACCAGCTTGGAAGAAGATTTCGAAGGACAAGCTACACACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005073-1-4,1-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0211411=Phosducin=PU(8.0=95.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCATTTGTCAACGCTTGA
R:
TCTTCCAAGCTGGTGTTTGCA
Band lengths:
106-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]