GgaALTA1023942-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000004565 | PHYHD1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23396]
Coordinates
chr17:5394933-5395468:+
Coord C1 exon
chr17:5394933-5395091
Coord A exon
chr17:5395393-5395397
Coord C2 exon
chr17:5395398-5395468
Length
5 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
CAGGCTCTTCTCTCTGACAGGGT
3' ss Score
8.35
Exon sequences
Seq C1 exon
TTCCGTGAGGATGGTTTCCTTGTCCTGGAGCACTTCTTCAGCCCTGAGGAGTGTGACAGCATGAGGAGCAGCATCCAGAGGATCCTGGATGGGATGGAGGTGCCACCACACTGCCGGACTGAGTTCTCCACCAAGGAAGAGGAGCAGCTCCAGGCACAG
Seq A exon
GGTAG
Seq C2 exon
CTCGGATTATTTCCTCACCAGTGGAGACAAGATCAGGTTCTTCTTTGAGAAGGGTGTTCTGGATGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004565-1-4,1-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF057218=PhyH=PU(21.0=98.1)
A:
NA
C2:
PF057218=PhyH=FE(10.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGGATGGGATGGAGGTG
R:
TTGTCTCCACTGGTGAGGAAA
Band lengths:
108-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]