GgaALTA1024324-3/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000003709 | PLAT
Description
plasminogen activator, tissue [Source:HGNC Symbol;Acc:HGNC:9051]
Coordinates
chr22:2716973-2718786:-
Coord C1 exon
chr22:2718676-2718786
Coord A exon
chr22:2717037-2717092
Coord C2 exon
chr22:2716973-2717036
Length
56 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TAAAACATCCTTTTCAACAGTTT
3' ss Score
6.22
Exon sequences
Seq C1 exon
CAGTTTTAAGTAGGACAGAGCTTTTCAGAGATTGTAACAGAGATGTGGAAAACATAAAAACAGACTGGTCTGGGAAGCAAATCAGCAGCAGAAAACGAAAAAGCAAAAAAG
Seq A exon
TTTATTTTTTCTTTTACCTCCATTTGAGATCCGGAGGTGATGTGGAAAACACTCAG
Seq C2 exon
AATGAAAGGCAAGCTCCTGAGTCTCCTCCTGCTGGTGGGAGTAATCAAGACTGCCCAATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003709-1-2,1-1,1-0-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACAGAGCTTTTCAGAGATTGT
R:
ATTACTCCCACCAGCAGGAGG
Band lengths:
145-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]