GgaALTA1024764-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000024479 | POGZ
Description
pogo transposable element with ZNF domain [Source:HGNC Symbol;Acc:HGNC:18801]
Coordinates
chr25:2079189-2080334:+
Coord C1 exon
chr25:2079189-2079335
Coord A exon
chr25:2080200-2080202
Coord C2 exon
chr25:2080203-2080334
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
TTCATTTGCATTTGCTTTAGAAG
3' ss Score
6.07
Exon sequences
Seq C1 exon
GTGTGTCAGTACCGCTCGTCGCTGTACTCGGAGGTGGACAGCCACTTCCGAATGATCCACGAGGACACGCGGCACCTGCTCTGCCCCTACTGCCTGAAGGTCTTCAAGAACGGCAATGCCTTCCAGCAGCACTTCATGAGGCACCAG
Seq A exon
AAG
Seq C2 exon
AAGAGTGTTTATCATTGCAACAAGTGCAGACTCCAATTCCTGTTCGCCAAGGATAAAATTGAACACAAGCTGCAGCATCACAAAACGTTCCGAAAGCCCAAACAATTGGAAGGATTGAAGCCTGGAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024479-21-26,21-25-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.289
Domain overlap (PFAM):
C1:
PF138941=zf-C2H2_4=WD(100=49.0)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAGCAGCACTTCATGAGG
R:
TGATGCTGCAGCTTGTGTTCA
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]