GgaALTA1028185-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000027253 | SBK3
Description
SH3 domain binding kinase family, member 3 [Source:HGNC Symbol;Acc:HGNC:44121]
Coordinates
chrLGE64:691184-692147:-
Coord C1 exon
chrLGE64:691836-692147
Coord A exon
chrLGE64:691370-691500
Coord C2 exon
chrLGE64:691184-691369
Length
131 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
TCATTGCTGTGTTCCCACAGAGC
3' ss Score
10.89
Exon sequences
Seq C1 exon
TTCCTGCCCGGCTCTCCGGCAGCCACTCCCCATGCCAGGGCCGCGTGGAGCTGCTGCAGGACGGCACCTGGGCCTCGGTCTGCGCCATGGGCTGGGACCTTGCAGCTGCCCACGTCCTGTGTCGCCAGCTGGGCTGCGGGCGCCCCCGAGCCGTCCCAGTGCCCTGCAGCCCTCCCATGGCTGAGGGGAACGTGGTGGGTCTGCGTCAGGTGCTGTGTGCAGGGCAGGAGCTGGACTTGGAGCACTGCAAGCTGCAGCCCGGTGACGCTGCATCTTGTCCCTCCAACCATGTGGCTGCTGTCAACTGCGAGG
Seq A exon
AGCCCTTCAGGCTGCGGCTGGCTGACGGGCCCAGGCGCTGTGCGGGGCGGCTGGAGGTGCAGCGAGCCGGGCGCTGGGGCACGGTGTGTGATGACGGATGGAGCAGGGCCAACATGGCTGTGGTATGCCAG
Seq C2 exon
GAGCTGGGCTGCGGCGAGGCGCAGGACCTGGATGGGGAGCGGCCACGTTTTGGGCCTGGTGTCGGGCACATCTGGCTGGATGACGTCCGATGCCAAGGGCAGGAGAAGAGCCTGCAGGACTGCGCACACCGTGTGTGGGGATACCATGACTGCACCCACCACGAGGACATTGGAGTTGTATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027253-3-3,3-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGGACTTGGAGCACTG
R:
GTGGGTGCAGTCATGGTATCC
Band lengths:
244-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]