GgaALTA1028240-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000001689 | SCAMP2
Description
secretory carrier membrane protein 2 [Source:HGNC Symbol;Acc:HGNC:10564]
Coordinates
chr10:1906683-1907499:+
Coord C1 exon
chr10:1906683-1906800
Coord A exon
chr10:1907371-1907374
Coord C2 exon
chr10:1907375-1907499
Length
4 bp
Sequences
Splice sites
5' ss Seq
ATCGTGAGT
5' ss Score
8.88
3' ss Seq
CTCTTTTGTCCCTTCCACAGCGA
3' ss Score
10.37
Exon sequences
Seq C1 exon
GCTGTGGCTGCAGCAGCACAGGCCGGGCTGCTTCAGCAGCAGGCAGAACTAGAGAGGAAAGCAGCTGAGCTGGAGAAGAAGGAAAGGGAATTGCAGAACAATGCAGCCAGCATTAATC
Seq A exon
CGAG
Seq C2 exon
ACAGAACAACTGGCCACCCCTCCCCAGGAAGTGTCCGATCAAGCCGTGCTTCTATCAGGACTTTTCTGCAGACATCCCAGCTGACTACCAGCGGATATGCAAGATGCTTTACTACTTGTGGATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001689-7-4,7-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.700 A=NA C2=0.068
Domain overlap (PFAM):
C1:
PF117403=KfrA_N=FE(39.0=100),PF120723=DUF3552=PU(84.8=97.5)
A:
NA
C2:
PF117403=KfrA_N=PD(3.0=6.8),PF120723=DUF3552=PD(13.0=13.6),PF041448=SCAMP=PU(30.4=95.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGAGCTGGAGAAGAAGGA
R:
GCTTGATCGGACACTTCCTGG
Band lengths:
100-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]