GgaALTA1028353-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000011176 | SCRN1
Description
secernin 1 [Source:HGNC Symbol;Acc:HGNC:22192]
Coordinates
chr2:34378515-34380635:-
Coord C1 exon
chr2:34380476-34380635
Coord A exon
chr2:34378616-34378620
Coord C2 exon
chr2:34378515-34378615
Length
5 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGC
5' ss Score
6.95
3' ss Seq
ACTTCTCTCTTCCTCATCAGCAT
3' ss Score
7.88
Exon sequences
Seq C1 exon
GAGAAGGGCCAGAAACTGATGAGCATTATGTTAGACCTCGAAAAGCAAGGCTTAGAAGCAATGGAAGATATCCTTACTCGTACAGAGATTCTGGATCCCGCTGAAGTAGTAGATCTTTTCTATGACTGTGTTGACACAGAACTAAAGTTCTTCAAATGAA
Seq A exon
CATAG
Seq C2 exon
TGACTGCAAGAAGCACACTTCATTCCAGAGACTACTGCACTGGATGAAGATGATATAAGAACGGTGTGCTTTTCCTAACTGCTGACAGCTCAGGTAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011176-17-31,17-30,17-29-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGATCCCGCTGAAGTAGT
R:
AGTCTCTGGAATGAAGTGTGCT
Band lengths:
104-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]