GgaALTA1028603-4/4 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000004476 | SEMA3G
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G [Source:HGNC Symbol;Acc:HGNC:30400]
Coordinates
chr12:3119089-3119530:-
Coord C1 exon
chr12:3119391-3119530
Coord A exon
chr12:3119190-3119303
Coord C2 exon
chr12:3119089-3119189
Length
114 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CTCATAGCCATGGCCGACAGGTA
3' ss Score
2.44
Exon sequences
Seq C1 exon
TGGATGACTTGGAGCATGTTGAAGAGAAGGTGCTGTATGGCATGGAGCACAACAGCACCTTCCTGGAGTGTGTGCCCCGCTCCCCGCAGGCCAGCGTGCAGTGGTTTGTGCAGAGACCCCCGGATGAGCAGAGGGATGAG
Seq A exon
GTAAAGACAGATGAGCGGGTCCTGCAGACAGAGCAAGGGCTGCTCTTCCGCCAGCTGCACCGCCGTGATGCCGGGGTCTACTACTGCAAGACACTGGAGCATGGCTTTACCCAG
Seq C2 exon
ACGGTGGCCAAGACAGCCCTGGAGGTGCTTGGGGGCGAGCAGCTTGCCCGTGCTACACCCCGGCAAAGGGAGGACAGGCACCCACCCTGTCCTGAGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004476-18-27,18-26,18-25,18-24-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=NA C2=0.419
Domain overlap (PFAM):
C1:
PF0143720=PSI=PD(1.8=2.1),PF0768612=V-set=PU(48.4=95.7)
A:
NA
C2:
PF0768612=V-set=PD(49.5=30.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGACTTGGAGCATGTTGA
R:
CAGGGCTCAGGACAGGGTG
Band lengths:
241-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]