GgaALTA1029409-2/4 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000005095 | SLC25A25
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 [Source:HGNC Symbol;Acc:HGNC:20663]
Coordinates
chr17:4811914-4819726:-
Coord C1 exon
chr17:4819460-4819726
Coord A exon
chr17:4818523-4818547
Coord C2 exon
chr17:4811914-4818522
Length
25 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
GCTTTCTTGCTTTCCAGCAGAGC
3' ss Score
7.63
Exon sequences
Seq C1 exon
GCGCGGCGATCGTTGGCCTCCCCGGTGGTGAGCGGCGTGCTGTGCCCCTGCGGCTCCCCGCGGGCCGCCGCCGCGCCCGGGACCGGCGCTGAAGGGAGTGGCGGCGGCCCCTGCGGAAGGGCGGTGTGCGAGGCCTCCGAGCAGGACCGGCGGCTCCGCGCCCTGTTCCAGAAGCTGGACGTGAACCGCGACGGCGCGCTCTGCATCCACGACCTGGCCGTGGGGCTGGGCCGCCTCGGGCTGCACCGCACCGAGCTGGACCTGCTG
Seq A exon
AGCTGCTCTGCTTGCCATGTTGCAG
Seq C2 exon
GAGCAGCAGAGAGGAAGCGTTCTGCAGCGTCTGGATCTGCTCTGTGCAGGGGGGAAGCACTGTGGATGGCTGTGCTGCTGCTGCGAGCCCTCAGCCATTGGGATTGTTCCTCAGCCCTTTGCTTCTTCTGCTCACTGTTGAGCTGTGCAGGAAGCAGCTGGTTGGATAAAGGGAGCTGGCGGGGCACTGGTGGTATTGCAGGGTCCCCTTCAGCAGTGTGACAATTAGCATCTGTGAAGAATGAGGATGCAGAGTTCAGAACTCCAGTTTCATTTGTGAGAGCAGCCCTTGGAGAGCTGGCTGGAAAACCTCCGCCTTGTGTCATCCTTTAGGGAAGATTGAATAAACTTCCTGTTTCCCAGAGAGTTCTATTAATAAAAGCATTCTTTTTTCCTTCCCTGTCCTTAGCCAATAATGACACTCAGACATGTGGGCTAAGCACTGTGAAGTCACATTCAAGAAAAGCGTTTAAGGGTCAGGATAAAGACGCAATGTTTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005095-0-3,0-2,0-1,0-0-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.101 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(62.5=44.9)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGCTGGACGTGAACCG
R:
CAGAACGCTTCCTCTCTGCTG
Band lengths:
123-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]