GgaALTA1029505-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000002982 | SLC2A6
Description
solute carrier family 2 (facilitated glucose transporter), member 6 [Source:HGNC Symbol;Acc:HGNC:11011]
Coordinates
chr17:6938513-6939050:-
Coord C1 exon
chr17:6938951-6939050
Coord A exon
NA
Coord C2 exon
chr17:6938513-6938614
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGCAAGT
5' ss Score
2.48
3' ss Seq
CCCGCTTCCTGCTCTCCCAGGGG
3' ss Score
9.84
Exon sequences
Seq C1 exon
GTCTACATCTCTGAGATCTCCCACCCTGGGGTGCGAGGCATGCTGGGCACGTGTCCTCAGATCATGGCAGTGCTGGGCTCCCTCATCCTCTACGTGCTGG
Seq A exon
NA
Seq C2 exon
GGGAAGGAGGACGAGGCCCTGCGCTCCCTGTGCTGGCTGCGAGGCAAGGACACAGACTATGCCCAGGAGTACGAGCAGATTAAGGACAGCGTGAGGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002982-4-5,4-4-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(7.3=100)
A:
NA
C2:
PF0008319=Sugar_tr=FE(15.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTACATCTCTGAGATCTCCCACC
R:
CTGCTTCCTCACGCTGTCCTT
Band lengths:
202-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]