GgaALTA1029731-1/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000001045 | SLC4A9
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 9 [Source:HGNC Symbol;Acc:HGNC:11035]
Coordinates
chr13:984531-984977:+
Coord C1 exon
chr13:984531-984709
Coord A exon
NA
Coord C2 exon
chr13:984905-984977
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
GCCTGCACTGCTGCCTGCAGGGA
3' ss Score
7.16
Exon sequences
Seq C1 exon
AAAGGGGCAGGCTTTCACCTGGACTTCCTCTGCGTCTCACTCCTGATGATCTTCACCTCTGTGATGGGCCTCCCCTGGTACGTGTCAGCCACTGTCATCTCCCTGGCACACATGGAGAGCCTCAGGAAGGAGAGCACCGCCTCAGCTCCAGGCGAGCAGCCCGAGTTCCTGGGCATCAG
Seq A exon
NA
Seq C2 exon
GGAGCAGAGGCTGACCGGCCTGGTGGTCTTCATCCTGACTGGAGTCTCTGTCTTCCTGGCACCCATTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001045-19-23,19-22,19-21-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(12.7=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(5.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTCAGCCACTGTCATCTC
R:
GAATGGGTGCCAGGAAGACAG
Band lengths:
167-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]