GgaALTA1030897-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000012513 | STAM2
Description
signal transducing adapter molecule 2 [Source:RefSeq peptide;Acc:NP_001012940]
Coordinates
chr7:34909594-34910189:-
Coord C1 exon
chr7:34910095-34910189
Coord A exon
chr7:34909668-34909676
Coord C2 exon
chr7:34909594-34909667
Length
9 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
ACCCTTGTTTCTTCTATCAGCAA
3' ss Score
7.83
Exon sequences
Seq C1 exon
TGACACCAATTGGTGGAAGGGTGAAAATCATCGAGGAGTGGGACTGTTTCCATCTAATTTTGTGACTTCTGATTTAAATGTTGAACCTGAGGCAG
Seq A exon
CAACTGTAG
Seq C2 exon
ATAACAGCTGTGTTCCTGAGGATGCTACAGAAGAAATTAAGAAAGCAGAACCTGAGGCAGTTTATATAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012513-19-15,19-14-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=NA C2=0.786
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PD(39.1=54.5)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCGAGGAGTGGGACTGTT
R:
GCATCCTCAGGAACACAGCTG
Band lengths:
93-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]