GgaALTA1031212-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000016946 | SUGT1
Description
suppressor of G2 allele of SKP1 homolog [Source:RefSeq peptide;Acc:NP_001025994]
Coordinates
chr1:165053306-165054170:-
Coord C1 exon
chr1:165054080-165054170
Coord A exon
chr1:165053370-165053375
Coord C2 exon
chr1:165053306-165053369
Length
6 bp
Sequences
Splice sites
5' ss Seq
CTGGTAACA
5' ss Score
4.6
3' ss Seq
TGTAAACTGACTTTCCACAGATG
3' ss Score
8.72
Exon sequences
Seq C1 exon
GAACTGACAAGAGCTTTGGAAAAGAGTCCAGATGATGCCGAATATTATTGTCAACGAGCTTATGCCCATATTCTTCTACAGAATTACACTG
Seq A exon
ATGCAG
Seq C2 exon
TTGCAGATGCGAAGAAGTCCTTAGAGCTCAACCCCAGTAATGCTGTAGCACTTCTTAGGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016946-5-4,5-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(45.5=100)
A:
NA
C2:
PF134141=TPR_11=PD(19.7=54.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGTCCAGATGATGCCGAA
R:
TGGGGTTGAGCTCTAAGGACT
Band lengths:
106-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]