GgaALTA1031307-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000003187 | SURF1
Description
Surfeit locus protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q800L1]
Coordinates
chr17:6872387-6872707:-
Coord C1 exon
chr17:6872629-6872707
Coord A exon
NA
Coord C2 exon
chr17:6872387-6872510
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CTCATTGTGGTTCTCTGCAGACG
3' ss Score
9.58
Exon sequences
Seq C1 exon
ATATCACACTGCTTGCTCAGAAGAACATTTTTCGGGTTTCCCCGAACGAAAGCAGGTTCTGCTGTGACCCAGCAGGGAG
Seq A exon
NA
Seq C2 exon
ACGTTTGCCTGAGGCTCTGCAGCCCACGAAGCTCCACGACAGCCACCAGTGCAGCTGGAGAGGACGCCTGGCTGAAGTGGGGCCTCCTCCTCGTGCCCCTGACTGCATTCTGTCTCGGCACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003187-2-2,2-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0210410=SURF1=PU(6.4=32.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTTCTGCTGTGACCCAG
R:
CGAGACAGAATGCAGTCAGGG
Band lengths:
144-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]