GgaALTA1031525-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000013370 | Sema3F
Description
semaphorin-3F precursor [Source:RefSeq peptide;Acc:NP_989589]
Coordinates
chr12:3186617-3186991:+
Coord C1 exon
chr12:3186617-3186750
Coord A exon
chr12:3186821-3186883
Coord C2 exon
chr12:3186884-3186991
Length
63 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
GCCCTTCTGTGTCCCCACAGCTG
3' ss Score
13.16
Exon sequences
Seq C1 exon
CCAACAAGAACACGGTGGAGGCCGTGCAGTACGGGGTGGAGGGCAGCACCGCCTTCCTCGAGTGCCAGCCCCGCTCTCCACAAGCCACCGTCAAATGGCTGCTGCAGAAGGACAACAGCGACCGACGGAAAGAG
Seq A exon
CTGCGCACAGAGGGCGGCCGGGCACTGCGGACAGAGCAGGGCTTGCTGCTGCGTGCCCTGCAG
Seq C2 exon
CTCTCCGACAGCGGGCTCTACTCCTGCACCGCCACCGAGAACAACTTCAAGCACACGGTGACCAAGGTGCAGCTGCGAGTCCTGGCCGCCCGCGCCGTGCACGCCGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013370-28-37,28-36-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=NA C2=0.292
Domain overlap (PFAM):
C1:
PF0768612=V-set=PU(47.3=97.8)
A:
NA
C2:
PF0768612=V-set=PD(50.5=82.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCACAAGCCACCGTCAAAT
R:
CAGCTGCACCTTGGTCACC
Band lengths:
134-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]