GgaALTA1031759-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000015546 | TBC1D14
Description
TBC1 domain family member 14 [Source:RefSeq peptide;Acc:NP_001239243]
Coordinates
chr4:79442540-79448535:+
Coord C1 exon
chr4:79442540-79442582
Coord A exon
NA
Coord C2 exon
chr4:79447806-79448535
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
3' ss Seq
TTTTCTTTCTTTTTAAGCAGTTA
3' ss Score
6.81
Exon sequences
Seq C1 exon
ATGGCCCAGCGTGAGCGGAGCGACGGAGCGCAGCGCTACCCCG
Seq A exon
NA
Seq C2 exon
TTACCACGTGGCCCAATACACCTGATGGAAATTTATCCAACTCCTTGAATGGTTTGAGCTTGATGGGTGTTCTAAACACAAGAGCCGGCGGCAGCATCCAGGGTCTTCAGAACTTGAAGTCCCCGAGGTCTCTCTCATTGTCTGAGTACGGGCCGGGTCAGCACTCAGGTGCTTTAGAAGATTGTCATAGCCTTAAATCAGTGGATTCTGGTATTCCAACCCTAGAAGTAGGAAATCCAGAGCCCGTTCACTGCAATGTGCTAACTGCGAAGAGGAAGCAGTCAGAACCTGAAATTGTGCCTGACAGAACTTTTCAGAGCGCGTGTACACTGCCGTCCTATGTGCCTCCACGGCCTCTGACTTCTGAACACGATCACGCCGTGCGAAAATCCTCTACTTTTCCAAGGACTGGGTATGACACTGTCAAGCTTTACAGTCCGACTTCAAAAACACTGAATCGAAGTGATGATATCTCTGTCTGTAGTGTTTCTAGTCTTAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015546-1-2,1-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.525
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]