GgaALTA1031787-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000009217 | TBC1D24
Description
Gallus gallus TBC1 domain family, member 24 (TBC1D24), mRNA. [Source:RefSeq mRNA;Acc:NM_001257271]
Coordinates
chr14:13949618-13952329:-
Coord C1 exon
chr14:13952274-13952329
Coord A exon
NA
Coord C2 exon
chr14:13949618-13949671
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGG
5' ss Score
9.63
3' ss Seq
TTCTCTTTCCATCCCAGCAGATC
3' ss Score
9.98
Exon sequences
Seq C1 exon
CGCTCTGAGCGGGTGGGTGGGGATGCGTCCGCGCGGCGCTGACGGGAGCAGCGGCG
Seq A exon
NA
Seq C2 exon
ATCCAGCAGAAGGGTGGAAGTCATAGGAAGATCTGTACAAGGACAAGTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009217-1-1,1-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGAGCGGGTGGGTGG
R:
ACTTGTCCTTGTACAGATCTTCCT
Band lengths:
102-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]