GgaALTA1032592-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000009054 | TMEM141
Description
transmembrane protein 141 [Source:HGNC Symbol;Acc:HGNC:28211]
Coordinates
chr17:412980-413332:-
Coord C1 exon
chr17:413121-413332
Coord A exon
chr17:413034-413042
Coord C2 exon
chr17:412980-413033
Length
9 bp
Sequences
Splice sites
5' ss Seq
CCGGTGCGT
5' ss Score
9.74
3' ss Seq
TGCTGACGGTGTCTCCGCAGGCG
3' ss Score
9.89
Exon sequences
Seq C1 exon
CGGCCGAGCCGGGGCCGGGCGCGGGGCGGCAGTAGCAGAGGTAGCGGTCCGGACCGTCCCGAAGCACTCGGAAAGGCCCCGACGGCTCCGCCATGGCAGCGCCGGAAGGGGCGGTGCGAGAGGCGCGGGGCGGCGCTGCGGGAACGGACGGCGCCGTGATGGTGCACCTCGGGCTGCGGCGGGTGGAGGACAGCGTGGCCGCCAAACACCCG
Seq A exon
GCGCTGCAG
Seq C2 exon
CAGTACGCGGCGTGTCAGGCCCACGCCTTCATGAAGGGCATCGGCACCTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009054-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF151101=TMEM141=PU(15.8=83.3)
A:
NA
C2:
PF151101=TMEM141=FE(23.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGTGATGGTGCACCTC
R:
GTGCCGATGCCCTTCATGAAG
Band lengths:
107-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]