GgaALTA1032593-4/4 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000009054 | TMEM141
Description
transmembrane protein 141 [Source:HGNC Symbol;Acc:HGNC:28211]
Coordinates
chr17:412788-413042:-
Coord C1 exon
chr17:412976-413042
Coord A exon
chr17:412843-412871
Coord C2 exon
chr17:412788-412842
Length
29 bp
Sequences
Splice sites
5' ss Seq
CGGGTACGG
5' ss Score
8.92
3' ss Seq
CCGGCTCGCTGTTCGGGCAGGCA
3' ss Score
5.69
Exon sequences
Seq C1 exon
GCGCTGCAGCAGTACGCGGCGTGTCAGGCCCACGCCTTCATGAAGGGCATCGGCACCTTCCTGGCGG
Seq A exon
GCAGCGGCGCTGCGTTTGCCGTGCAGAAG
Seq C2 exon
CTGGTGAACAGGAGGCTGCCGTACGCGCTGCAGTGGAACCTGCTGCTGTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009054-2-5,2-4,2-3,2-2-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF151101=TMEM141=FE(23.2=100)
A:
NA
C2:
PF151101=TMEM141=FE(29.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTACGCGGCGTGTCAG
R:
CACAGACAGCAGCAGGTTCC
Band lengths:
112-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]