GgaALTA1033165-1/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000004165 | TOR1A
Description
torsin-1A precursor [Source:RefSeq peptide;Acc:NP_001025858]
Coordinates
chr17:5702913-5703985:-
Coord C1 exon
chr17:5703720-5703985
Coord A exon
NA
Coord C2 exon
chr17:5702913-5703088
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
CCTGTTTTTATGCTACTCAGGAC
3' ss Score
6.46
Exon sequences
Seq C1 exon
CGCTGCAGGAGAGCCTGGACAGACGGCTGTTCGGGCAGCACCTGGTCAGCAAGGTGGTGGTCAGGGCCGTGCGGGGCTTCCTCAGCAACGCCCAGGCCAAGAAGCCGCTGGCGCTGTCCCTGCACGGCTGGACGGGCACCGGCAAGAACTTCGTCAGCAAAATCATCGCCGAGAGCATCTATAAGAGGGGGCTGAAGAGTAACTACGTCCATCAGTTCGTGGCTACGCTGCATTTCCCTCACGCTCACAGCATCAACCTCTACAAG
Seq A exon
NA
Seq C2 exon
GACCAATTGCAGTCATGGATTCGGGGAAACGTGAGCATCTGCCCCAGGTCAATCTTCATATTTGATGAAATGGATAAAATGCACGCAGGACTCATTGATGCCATCAAGCCATTTCTGGACTATTATGAGCTTCTGGATGGAGTGTCGTACCGACAAGCCATCTTCATATTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004165-1-6,1-5,1-4-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=FE(69.3=100)
A:
NA
C2:
PF063096=Torsin=PD(15.7=33.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCATCAGTTCGTGGCTAC
R:
TGAAGATTGACCTGGGGCAGA
Band lengths:
119-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]