GgaALTA1034383-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000018998 | UNC5A
Description
unc-5 netrin receptor A [Source:HGNC Symbol;Acc:HGNC:12567]
Coordinates
chr13:9657099-9657656:-
Coord C1 exon
chr13:9657365-9657656
Coord A exon
NA
Coord C2 exon
chr13:9657099-9657242
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
TGTGCCCCATCCCGTCCTAGGGC
3' ss Score
9.74
Exon sequences
Seq C1 exon
GGGGGGGACAGCTGCAGGACATGGAGCCGTTGGTGTCCCTGGAGGTGGCTGAGCTCCCATGTCCCCACAGGCGCCCAGCAGAGCGTGACGGTGGCCAGCCCTGCATCGGGCGCGTCCCCCGACCTGCTGCCCCACTTCCTGCTGGAGCCCGACGACGTCTACATCGTAAAGAACAAGGCGGTGAGCCTGGCCTGCCGCGCCACCCCCGCCACTCAGATCTACTTCAAGTGCAATGGGGAGTGGGTGCACCAGGGTGACCACATCACACAGCGCAGCACTGACCGCGGCACCG
Seq A exon
NA
Seq C2 exon
GGCTGCCCGTGATGGAGGTGCGCATCGAGATCACCCGCCAGCAAGTGGAGAAGCTCTTTGGTCTGGAGGAGTACTGGTGCCAGTGCGTGGCGTGGAGCTCCTCCGGCACCACCAAGAGCCAGAAGGCCTTCGTGCGCATCGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018998-1-1,1-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAAGTGCAATGGGGAGTGG
R:
ACTCCTCCAGACCAAAGAGCT
Band lengths:
142-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]