GgaALTA1035131-2/4 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000028882 | VWCE
Description
von Willebrand factor C and EGF domains [Source:HGNC Symbol;Acc:HGNC:26487]
Coordinates
chr5:406183-406468:+
Coord C1 exon
chr5:406183-406291
Coord A exon
chr5:406442-406460
Coord C2 exon
chr5:406461-406468
Length
19 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCACCCTCTGCCCGCCCCAGCTG
3' ss Score
5.95
Exon sequences
Seq C1 exon
GCCCCCTCGGGACTCCCACCTCGGCCCCTCTCTGCTGGCACCGCGGGGGCTCCCCCGGGAGCCGGGAGCTCGCTGGACGGAGCCGGGGTGCCAGAGCTGCAGCTGTCAG
Seq A exon
CTGGGGGCTGCTGTCCCAG
Seq C2 exon
CTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028882-0-3,0-2,0-1,0-0-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(40.4=58.3)
A:
NA
C2:
PF0009313=VWC=PD(55.8=90.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]