GgaALTA1036606-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000015358 | myosin
Description
myosin heavy chain, cardiac muscle isoform [Source:RefSeq peptide;Acc:NP_990097]
Coordinates
chr1:86885146-86886354:-
Coord C1 exon
chr1:86886151-86886354
Coord A exon
chr1:86885264-86885271
Coord C2 exon
chr1:86885146-86885263
Length
8 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGC
5' ss Score
5.52
3' ss Seq
GTTGGAAAATGTAATGAAAGAAC
3' ss Score
-6.53
Exon sequences
Seq C1 exon
GAGCTCCAGGTGCAGCTGGATGACTTGGGACACCTGAATGAAGACTTGAAGGAGCAGCTGGCAGTCTCTGACAGGAGGAACAACCTTCTCCAGTCAGAGCTGGATGAGCTGAGGGCTTTGCTGGACCAGACTGAACGGGCGAGGAAGCTGGCTGAGCATGAGCTACTGGAAGCCACCGAACGTGTGAACCTGCTGCATACTCAG
Seq A exon
AACACAAG
Seq C2 exon
CCTGATCAATCAGAAGAAGAAACTGGAGGGTGACATATCCCAGATGCAGAATGAAGTGGAGGAATCAATCCAGGAGTGCCGGAACGCAGAGGAAAAAGCCAAAAAAGCGATCACAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358-43-57,43-56-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.441 A=NA C2=0.952
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(8.1=100),PF0003816=Filament=PU(21.2=67.6)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.9=100),PF0003816=Filament=FE(18.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTGAACCTGCTGCATACT
R:
CGGCACTCCTGGATTGATTCC
Band lengths:
105-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]