GgaALTD0000158-2/3 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000000623 | PIK3C2B
Description
NA
Coordinates
chr26:1591220-1592165:-
Coord C1 exon
chr26:1592076-1592165
Coord A exon
chr26:1592043-1592075
Coord C2 exon
chr26:1591220-1591387
Length
33 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGG
5' ss Score
4.69
3' ss Seq
CTCTGACTGCTCTCTTGCAGGAT
3' ss Score
10.78
Exon sequences
Seq C1 exon
CTATGAAGATTTCTACCTCTCTTGCTCCATCACGCACGGTGGTAAGGAGCTGTGCAGCCCCCTGCACACCAGAAAGGCCCACGTCTACAA
Seq A exon
GTACCTTTTCCACCTCATCATATGGGACCAGCA
Seq C2 exon
GATCTGCTTCCCCGTCCAGGTGAACCGACTGCCGCGGGAGACGCTGCTCAGCGTCACGCTCTTCGCCGTGCCCGTCCCCCCCCCGGGGAGCTCCTCCGACACCAACAAGCAGCGGCGGGTCCCTGAGGCTCTGGGCTGGGTCACCACTCCGCTCTTCAACTTCAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623-12-15,13-15,14-15-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.140
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=PU(29.1=97.6)
A:
NA
C2:
PF0079219=PI3K_C2=FE(39.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAAGGCCCACGTCTACAA
R:
TGTTGGTGTCGGAGGAGCTC
Band lengths:
128-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]