Special

GgaALTD0000215-1/4 @ galGal4

Alternative 5'ss

Gene
Description
zinc finger protein 821 [Source:HGNC Symbol;Acc:HGNC:28043]
Coordinates
chr11:19181694-19182465:+
Coord C1 exon
chr11:19181694-19181819
Coord A exon
NA
Coord C2 exon
chr11:19182323-19182465
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
AACTGCTTTGTTTGTTCAAGGTG
3' ss Score
7.87
Exon sequences
Seq C1 exon
GGGAGCAAGTCTTTGCGGGGCTGGAGGAGCAAGCCCGCCAAGCCATGATGAAAAACAGCTTTCCTGGAGCTCTTGGGGACCAAAGGCCAGCTATTCATCCACTGCAAGACCGCGATTTCAGCAGCA
Seq A exon
NA
Seq C2 exon
GTGGCAGTGATGATGAGGAAACCACCCACGATGAAGTTTCTTCCCATACTTCAGAGGAGGATGGCTCAATGCTAAAGGTGAAGAAAGAACTGGAGAATGCAGAACAACATGCAGCTGGAACCCCACTGATGAGAGAGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000817-9-6,10-6,11-6,12-6-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact

Protein isoform when splice site is used (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCATCCACTGCAAGACCGC
R:
GCATTGAGCCATCCTCCTCTG
Band lengths:
106-110
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]