GgaALTD0000340-1/3 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000001163 | NDEL1_CHICK
Description
NA
Coordinates
chr18:1663231-1670709:+
Coord C1 exon
chr18:1663231-1663331
Coord A exon
NA
Coord C2 exon
chr18:1670612-1670709
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
CTTATGTCTGCATCCTACAGGTC
3' ss Score
9.21
Exon sequences
Seq C1 exon
CGGCGTGACGTCACGACCACACCCCGCCCATCGCGGTGCCCGGATGAGGCAGTTCCGCCGGCGGCGGGTGGTGCTGCGGCTGTGACAGGGGATGCGCTCCG
Seq A exon
NA
Seq C2 exon
GTCATATTGAACATGGACAGTGAGGAAATTCCGACCTTCTCAAGTCCAAAGGAGGAAACTGCTTATTGGAAAGAGCTTTCCTTGAAGTACAAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001163-0-0,1-0,2-0-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.414
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACGTCACGACCACACC
R:
TGTTTGTACTTCAAGGAAAGCTCT
Band lengths:
192-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]