GgaALTD0000345-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000001169 | CRB2
Description
NA
Coordinates
chr17:9720896-9722732:+
Coord C1 exon
chr17:9720896-9721059
Coord A exon
chr17:9721060-9721061
Coord C2 exon
chr17:9721865-9722732
Length
2 bp
Sequences
Splice sites
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
3' ss Seq
CACTATTCCTTTATTTATAGGTC
3' ss Score
8.7
Exon sequences
Seq C1 exon
TCTGAACCATGTCAGAATGGTGGAAGGTGCATTGTCACGTGGAATGATTTCCATTGCAGCTGTCCAGCAAATTTCACTGGGAAGTTTTGTGAAGAGAGAGTCTGGTGTGAAAGTGACCCATGTCCTGAAGCTACCACCTGTATAGATGTTCCAGCAGGATATGT
Seq A exon
GT
Seq C2 exon
GTCTGGCTAACGCAACATTTAATAGTTCTGCTACCATTGAATTTACCACCAATACATCAGTGACTAGAACTCTGGGCAGCCTCCTCATGGATTTCAGAACCAGAGACGAAGACGCTGTTTTGCTTCGGGCTATGGAAGAAGTGGACTCCCTCCAGATAGCTATTAAGAACTCCTCCTTGCTTGTTGACATCAGGAGTGGGAATAGTATTGAAGGTGTCAGCTTCCTGAGTCAGAATGCTGTCACCGATGGCGCCTGGCATACAATCTCTCTGTCAATGGAGGAGCCTTCTGCACTGTCTTCCAGATGGGTGGCTCATTTGGATGGATCTATTAATATGACTCTGCAGGGAAATGCTGGGAACCTGGACTTCTTAAAGAACAACGCACTGATTGTTCTAGCTGAAAACTTCACAGGCTGCCTAGGACAAGTGAAGATAGGAGGGATCTACCTGCCATTCACCTCCCATCTCTCATATCCTCAGCCAGAACAGTTCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001169-17-18,18-18-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(90.3=50.0)
A:
NA
C2:
PF0221019=Laminin_G_2=WD(100=40.7),PF0000822=EGF=WD(100=10.7),PF0000822=EGF=WD(100=12.8),PF0000822=EGF=WD(100=13.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTATAGATGTTCCAGCAGGA
R:
GCTGCCCAGAGTTCTAGTCAC
Band lengths:
108-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]