GgaALTD0000358-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000001225 | RABGAP1
Description
NA
Coordinates
chr17:9582358-9583138:+
Coord C1 exon
chr17:9582358-9582445
Coord A exon
chr17:9582446-9582937
Coord C2 exon
chr17:9583028-9583138
Length
492 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGC
5' ss Score
6.16
3' ss Seq
ACCTTTTTGTCCACCCACAGCGT
3' ss Score
10.43
Exon sequences
Seq C1 exon
CCAGAAGAAGCTGAAGAAATATGAAAAGGAGTATCATACCATGAGAGAGCAGCAAGCTCAGCAGGAGGATCCAATAGAAAGATTCGAG
Seq A exon
GTAATGCTTACCTACTGTAATCTGATTTATCATGCAGCACCTGCAGGAAATTCCTACTTAGATTTTTTTTTTTCTTTAAGCCGTTTTGTCTTCTGAGAAGTACATGTACACATCCATCCACTTACATGTTTTAAGCTGAAAAGTTTTATGTAAACTTTAACATTTGTCTGTGTGATGGGAATTGTAGGAGAATATAGAGTGGCTTTCCCGGTACCATCCACTCGCATGCTTTTCCAGCATGAAAATTTTATTTTCAGCCATTAGGAAATGAGCCATTAGGAAATCAACACCTTGGCAAGGTGTTGACGGCAGTGACACTCCTACCACTCAAAAACATTTCACTAGCTCAACAAGTAATAGATGAGTTATTAACATGTGGTTTCTTCTCAAGGCTAATATTTAATTTGCTTTATTTTATATCTACTACATGATTAGCAGCTCTTGTCCTCGCTGAATTTCGTGCAGGTGGAATTGTCTTTCAGTGTTCGAGAT
Seq C2 exon
CGTGAGAACCGGCGTCTACAAGAAGCAAACATGAGGCTTGAGCAAGAAAATGATGACCTTGCACACGAACTGGTGACCAGCAAGATTGCTCTGCGGAAAGATTTAGACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001225-22-28,23-28-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.565 A=NA C2=0.297
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAAGAAGCTGAAGAAATATGAA
R:
TTGTCTAAATCTTTCCGCAGAGCA
Band lengths:
198-690
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]