GgaALTD0000478-1/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000001565 | C5
Description
complement component 5 [Source:HGNC Symbol;Acc:HGNC:1331]
Coordinates
chr17:8325313-8326095:-
Coord C1 exon
chr17:8326024-8326095
Coord A exon
NA
Coord C2 exon
chr17:8325313-8325518
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTATTG
5' ss Score
5.64
3' ss Seq
TTGAAACCTTTCTTCTGTAGGTG
3' ss Score
9.87
Exon sequences
Seq C1 exon
CTCTTGTGGATTTGAATCATCAGGCTGCAAGATCCTTGTTCTCTGCTCTGAAGAGGGAAGCGTCTGTCATAG
Seq A exon
NA
Seq C2 exon
GTGACCCTCCTATCTATCGTTTTTGGAAGGATGATTTTAAAACATCAGACCTACTTGCTCCCAGCCCTGTTACTGCACAAATGGTTGAGACTACAGCATATGCATTGCTTACTGCTTTGTTAAGAGGAGATAAGAACTATGCTAATCCAATCATCAAGTGGTTGTCTGAAGAACAAAGATACGGTGGAGGATTTTACTCAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001565-31-39,32-39-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(22.6=100)
A:
NA
C2:
PF076789=A2M_comp=FE(27.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTGTGGATTTGAATCATCAGGC
R:
CTGAGTTGAGTAAAATCCTCCACCG
Band lengths:
278-627
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]