GgaALTD0000659-1/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000002001 | STXBP3
Description
NA
Coordinates
chr8:1274785-1278043:+
Coord C1 exon
chr8:1274785-1274885
Coord A exon
NA
Coord C2 exon
chr8:1277994-1278043
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
CTGTCTCTTCTTTTCTATAGAGC
3' ss Score
9.91
Exon sequences
Seq C1 exon
CTCCAGCGATGCTCTCTCCGAACCGCGCATGTCGGAGCTGCGTCCCGCGCCGGGAGCGGGCAGCCGCGGCAGCTCGGTCCTGCACGGACTTGAACTTGTAG
Seq A exon
NA
Seq C2 exon
AGCTGAAATCTGCGGTATTTGATGACTGTAGGAAAGAGGATGAATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002001-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0099518=Sec1=PU(0.2=5.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]