GgaALTD0000661-1/4 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000002001 | STXBP3
Description
syntaxin-binding protein 3 [Source:RefSeq peptide;Acc:NP_001073202]
Coordinates
chr8:1264476-1267052:+
Coord C1 exon
chr8:1264476-1264576
Coord A exon
NA
Coord C2 exon
chr8:1267003-1267052
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
CTGTCTCTTCTTTTCTATAGAGC
3' ss Score
9.91
Exon sequences
Seq C1 exon
CCGGCGCCGCCTCTGAAGAGGGCGCGGCCAGGAGCTGTGTGGTGGTGCGGCGAGCAAGATGGCGCCGACTGCGCGGGGGCTGAAGAGTTTGGTGTGGCAGA
Seq A exon
NA
Seq C2 exon
AGCTGAAATCTGCGGTATTTGATGACTGTAGGAAAGAGGATGAATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002001-2-1,3-1,4-1,5-1-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0099518=Sec1=PU(0.2=5.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAGCTGTGTGGTGGT
R:
TCCATTCATCCTCTTTCCTACAGT
Band lengths:
122-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]