GgaALTD0000761-2/3 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000002267 | DCUN1D3
Description
NA
Coordinates
chr14:15669645-15670407:-
Coord C1 exon
chr14:15670168-15670407
Coord A exon
chr14:15670118-15670167
Coord C2 exon
chr14:15669645-15669721
Length
50 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
TTGGTCCTTTTGTTTTACAGTGT
3' ss Score
9.43
Exon sequences
Seq C1 exon
AGACCAGGATGTGGTGCAGGACCATGTCAAAGGCCTTGTAGGCCATCCAGGCAGATGACACCAGATGCCCTTCCTTTGTCCACTGATGCCATCACTCCATCACAGAAGGCCACCAGATGGGTCAGGCACGACCTTCCCTTGGTGAAGCCATGCTGGCTGTCTCAGATCACCCACTCATCCCTCATGTGCCTTAGCATCTCTTCCAGGAGGATCTGCTCCATGGTCTTCCCAGGCACAGAG
Seq A exon
GTGATGCTCACCAGCCTGTAGTTCCGCAGGTCCTCCTTTTCCCCTTTCTT
Seq C2 exon
TGTTCCATGTGGATCCCAGAGGGCCTGCAGGCGGCTGTGAAAGCCAATGGAAGGACTCCCTGCATAGCCGGAATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002267-2-1,3-1,4-1-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTCATCCCTCATGTGCCT
R:
ATCATTCCGGCTATGCAGGGA
Band lengths:
147-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]