GgaALTD0000833-1/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000002429 | C18orf10
Description
NA
Coordinates
chrZ:6642568-6643920:+
Coord C1 exon
chrZ:6642568-6642699
Coord A exon
NA
Coord C2 exon
chrZ:6643807-6643920
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
ATTTTTTTTTCTGCTTTCAGGTA
3' ss Score
12.11
Exon sequences
Seq C1 exon
ATACTCCAATGCCCCTGGGCTCCATGGTGATTAACAGTATCTCGAAGCTTTGTCGGCTTGGAGGTTCCTCCATGTACACCGTGCCTAATGCACCATCTCTTGCTGACCTGGAAGATGATACAGATGAGGAGG
Seq A exon
NA
Seq C2 exon
GTAATGAAGACAAACCAGAGAAACCACACTTTGATTCTCGTAGTCTTATTTTTGAACTAGACCCGTGCAATGGGAATGGGAAAGTTTGTCTCGTTTATAGGCATACTAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002429-5-11,6-11-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=NA C2=0.231
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATCTCTTGCTGACCTGGA
R:
CCCATTGCACGGGTCTAGTTC
Band lengths:
115-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]