GgaALTD0001165-1/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000003164 | DNM3
Description
dynamin 3 [Source:HGNC Symbol;Acc:HGNC:29125]
Coordinates
chr8:4631503-4637066:-
Coord C1 exon
chr8:4637037-4637066
Coord A exon
NA
Coord C2 exon
chr8:4631503-4631603
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATTGTACGA
5' ss Score
0.93
3' ss Seq
CTGACTGCACCTCTGCACAGGTC
3' ss Score
7.67
Exon sequences
Seq C1 exon
GGAACCAATCTACCGCCTTCAAGGCAAATT
Seq A exon
NA
Seq C2 exon
GTCATCCGGAAGGGCTGGCTGACCATCAACAATATTGGCATCATGAAAGGAGGATCCAAAGAATACTGGTTCGTTCTAACTGCAGAAAGCCTGTCCTGGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003164-25-23,26-23-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
ENSGALT00000005010fB456
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCAATCTACCGCCTTCA
R:
TCTGCAGTTAGAACGAACCAGT
Band lengths:
116-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]