GgaALTD0001247-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000003354 | KCNH4
Description
NA
Coordinates
chr27:4501304-4503106:-
Coord C1 exon
chr27:4502892-4503106
Coord A exon
chr27:4502888-4502891
Coord C2 exon
chr27:4501304-4501351
Length
4 bp
Sequences
Splice sites
5' ss Seq
TGGGTGCGT
5' ss Score
5.46
3' ss Seq
TCTCCAAATCTCTCTCGCAGGGG
3' ss Score
9.77
Exon sequences
Seq C1 exon
GCAAAGGGGATCTGATCGGTGCCGACCTGGCCAGCAGGGACCCGGTGATCAAAACCAACGCGGACGTGAAGGCGCTGACCTACTGCGACCTGCAGTACATTGGGCTGCGGGGGCTGCGTGAGGTGCTGCAGCTCTACCCCGAGTATGCCAGCAAGTTCGCAGCGGACATCCACCAGGACCTCACCTTCAACCTGCGGGAGGGCAGCGAGATGGAG
Seq A exon
GTGG
Seq C2 exon
GGGCTCGGCCGCTTCGCCCGCTCCCCGCGCCTCTCGCAGGCATCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003354-11-15,12-15-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.938
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PD(53.4=65.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAGGACCTCACCTTCAAC
R:
CTGCGATGCCTGCGAGAG
Band lengths:
93-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]