GgaALTD0001248-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000003354 | KCNH4
Description
NA
Coordinates
chr27:4504781-4505302:-
Coord C1 exon
chr27:4505059-4505302
Coord A exon
chr27:4505055-4505058
Coord C2 exon
chr27:4504781-4504938
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTCTGT
5' ss Score
3.44
3' ss Seq
CTGTGCTCCCCCTGGGGCAGACA
3' ss Score
6
Exon sequences
Seq C1 exon
AATGTGTTTGAGAACAAGCCCTCCATCCCCGAGTACAAGGTGGCCTCGGTGCAGAAAGCCCACTTCATCCTGCTGCACTACAGCATCTTCAAGGCCCTCTGGGACTGGCTGATCCTGGTGGCCACTTTTTATGTGGCTGTCACTGTCCCCTACAACGTCTGCTTCACCAGCACGGAGGACAGCCTCTCGGCCGCACGCAGCACCATCGTCAGTGACATCGCGGTGGAGATGCTCTTCATCCTGG
Seq A exon
GTAG
Seq C2 exon
ACATCATCCTGAATTTCCGGACGACGTATGTGAGCCACTCAGGCCAGGTGGTGTATGAGCCCCACTCCATCTGCATCCATTACGTGGCCACCTGGTTCTTCGTGGACCTGATTGCCGCGCTGCCCTTCGACCTGCTCTACATCTTCAACGTGACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003354-4-5,5-5-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084125=Ion_trans_N=PD(87.1=74.4),PF0052026=Ion_trans=PU(5.7=14.6)
A:
NA
C2:
PF0052026=Ion_trans=FE(24.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCACCATCGTCAGTGACAT
R:
TCATACACCACCTGGCCTGAG
Band lengths:
105-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]