GgaALTD0001429-2/6 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000003757 | POMT1
Description
protein O-mannosyl-transferase 1 [Source:RefSeq peptide;Acc:NP_001025856]
Coordinates
chr17:6220982-6221845:+
Coord C1 exon
chr17:6220982-6221082
Coord A exon
chr17:6221083-6221158
Coord C2 exon
chr17:6221722-6221845
Length
76 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGG
5' ss Score
4.7
3' ss Seq
GCAGCACTTCTGTTTTGTAGGTA
3' ss Score
5.8
Exon sequences
Seq C1 exon
GTGACACACCGTGTCCCTGACTCGCCTTCCGCTCTCTGCGTCTGACGTCACTTCCGGCGTAGCGCGGCGGGCCGAAGCACTTCCGGCTGCGATCTCTTCAG
Seq A exon
GTTGTGGTCGTCCTGGGCTCGCTGCCCCTGGGGCGTGGAGCTGTGCTCCTGCTCCCCTTCCACCCCCATCGCCTCT
Seq C2 exon
GTAGCAAGAAACAAGGACGGTGGCACTGCATTTGGTGGTGGTGATGTGCTCGCATCCTGCTTTGCTCACACCTGATGAAAGCCATGCAAAAGAATTTATTCCAGTAGCTTTTGGTGATACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003757-0-0,1-0,2-0,3-0,4-0,5-0-2/6
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACACCGTGTCCCTGACTC
R:
AGGTGTGAGCAAAGCAGGATG
Band lengths:
171-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]