GgaALTD0001608-4/4 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000004226 | E2IPN6_CHICK
Description
NA
Coordinates
chr17:6235288-6236101:-
Coord C1 exon
chr17:6236001-6236101
Coord A exon
chr17:6235548-6236000
Coord C2 exon
chr17:6235288-6235425
Length
453 bp
Sequences
Splice sites
5' ss Seq
ACGGTGGGG
5' ss Score
4.97
3' ss Seq
CTTCCTGTCCCCCTCTGCAGGGC
3' ss Score
12.5
Exon sequences
Seq C1 exon
AAATTCAGATGCCCCTTTCTAGGCTAGGATCAGCCTGCACCGGGCTCCCCTGATTCACGTTCTGGGAGAAAAGCAAGCGGAGCTGCCCCAGGGACGGGTTG
Seq A exon
GTCTGTATTTCCCTCTGCAGACTGGGGTCTTTGGGGTTCTCCTGTTGGGTTTTGGGATCCTTTGTGGCTTTGGGACCCTCCCAGGGGCAATCCGGTCTGGTGGGCAATGTGTGCAGCCGGAATGAGGGCCAGCTCTGTCCCTGACCCTTTGGCAGGTGGTGCCAAGGGGAGGGCCGGCTGCCTGTGCAAAGTGCTCAGTCTGTGTGGGGCGGGACTGGGAGCACTGGGACGTGCCACGCAGGGCTGTGGGATCGGGACGGAGCTGGGCTGGGTGCAGCAGAAGTAGGTACCTTGTTTCTCCTGCCTCCTCCTCCCCAGGGCTGCCAATGGGCAAGGGTGTGCAGCTCTGGGCATGAGCACGAGGGGAGGTCTGGGGAGTGTTGTAGGGCAGGCTGATGCTGTGTGGAGGGAGTTGGATCCCAGCTCGGAGCATCCGAGGGGCAGAAGCACACG
Seq C2 exon
GGCCAAGGCAGGAGCTCCGCATCCTCCACAATGATGGGGAACACCGTGTTCCTGTCATTCGCCTTCTACAGCACGATCCTGATCCTAAAGATGTATGTCGTTGCCATCATCACGGGACAAGTGAGGCTCAGGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004226-0-0,1-0,2-0,3-0-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.023
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0112413=MAPEG=PU(19.8=60.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTCAGATGCCCCTTTCTAGG
R:
CTTCTTCCTGAGCCTCACTTGT
Band lengths:
238-691
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]