GgaALTD0001616-2/4 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000004240 | ORAI1
Description
calcium release-activated calcium channel protein 1 [Source:RefSeq peptide;Acc:NP_001025829]
Coordinates
chr15:5569343-5584055:+
Coord C1 exon
chr15:5569343-5569443
Coord A exon
chr15:5569444-5569618
Coord C2 exon
chr15:5583445-5584055
Length
175 bp
Sequences
Splice sites
5' ss Seq
GCGGTAGGA
5' ss Score
6.86
3' ss Seq
TTTTTTCCCTTTCCTTTCAGGTG
3' ss Score
14.29
Exon sequences
Seq C1 exon
AGCCAAAGTACCCGGCCCAGGGGGCGGCTCCCCGATGCACGACACGTGGAGGCGGCCGCGGCCGTACCTTTCCCGTCCATAGAGTGCACGAAATCCCCGCG
Seq A exon
GTACGTTTTGCTCTTTAATTTCTCCTCCAGATTGAAACTCCTGACGCTGACGATTTCCTCCACGTCCGAGAGGTCCTCGTGCTCATCGTACCTCCTCCTGCCAATGGGCCGCTGCAAGACACAAAGCACACAGGGCGGAAAAGTGGGATCGGCGGGGACAGTGATGCGATCAGCG
Seq C2 exon
GTGGCCATGGTAGAAGTTCAGCTTGATGCAGAACATGACTACCCACGAGGTCTCTTGATAGCCTTCAGTGCCTGTACTACAGTCCTTGTTGCTGTTCACCTTTTTGCACTCATGATAAGTACCTGCATTCTTCCAAATATAGAGGCTGTTAGCAACGTGCATAATCTCAACTCTGTAAAGGAATCTCCTCATGAGCGTATGCATCGGCACATTGAGCTTGCCTGGGCATTTTCTACTGTCATTGGGACTTTGCTCTTTCTTGCAGAGGTGGTGTTGCTGTGTTGGGTGAAGTTTCTTCCCCTGAAGAAGAACCCCCTTGACCCAGCTGAGAACAGCAATTCTAGCATCACATCAGGACAGGCAGCAGCCATTGCATCGACATCTATCATGGTTCCCTTTGGACTGATTTTCATTGTCTTTGCAGTCCACTTCTACAGGTCTCTGGTGAGCCATAAAACAGACAGGCAGTTTCAAGAACTGAATGAACTTGCTGAATTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004240-0-3,1-3,2-3,3-3-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.016
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF078567=Orai-1=PD(81.2=82.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTCCCGTCCATAGAGTGC
R:
CCGATGCATACGCTCATGAGG
Band lengths:
242-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]