GgaALTD0001670-3/3 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000004378 | ASB6
Description
NA
Coordinates
chr17:6205747-6206282:-
Coord C1 exon
chr17:6206182-6206282
Coord A exon
chr17:6206071-6206181
Coord C2 exon
chr17:6205747-6205981
Length
111 bp
Sequences
Splice sites
5' ss Seq
GAGGTTCTG
5' ss Score
-0.32
3' ss Seq
AAATCCGTGTTTGTTTTCAGAGG
3' ss Score
7.61
Exon sequences
Seq C1 exon
GCGCCGTAGCCCCGCCCCCACGAGGCCCCGCCCCCATTTCAGGCTCCGCCCACCGAGAGGACGCAGCTGGCGACTTCCGCTTCCGGCGGCGGGGCCGTGAG
Seq A exon
GTGAGGGCGGTGTGGCGGTGTTTTGTGTTCCGTCCTTCGGGCTTCGCTCCGCGGGGAGGGATTGGGGCCTCCGGGACCGTCTCGGTGGGGGTCTGCCGGCGCTGCCTCGAG
Seq C2 exon
AGGAGGGGGCGGCCCCGTGGAAAGCAGGCCTGGCTCGGCCTGCGGGTTCCTGAGTGTGGGCAGGCGGCACTGCCATGCGGGAGGGCCCTGCGGGGCCTGTGTGCAGAGCACAGCGCTGGAGGATGCCTTTCCTACACGGCTTCCGCAGGATCACTCTCGAGTACCAGCCCTTGGTGGATGAGATCTTGGCGTTGCTGGCGCTACAGGATGCAGAAAGGCAGGACACGCTTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004378-0-0,1-0,2-0-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.037
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF127962=Ank_2=PU(2.0=3.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCCCCATTTCAGGCTC
R:
GGGCTGGTACTCGAGAGTGAT
Band lengths:
243-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]