GgaALTD0001953-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000005069 | PGH2_CHICK
Description
NA
Coordinates
chr8:10059591-10060364:+
Coord C1 exon
chr8:10059591-10059691
Coord A exon
chr8:10059692-10060148
Coord C2 exon
chr8:10060248-10060364
Length
457 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGC
5' ss Score
4.2
3' ss Seq
AGTGTTTGATTTCATTCCAGCCA
3' ss Score
4.61
Exon sequences
Seq C1 exon
TTTGGAATTTCAGTAGTTGCGAGGAAAGCGTAAAGAAGCCCGCCGGGATATGCTGCTGCCTTGTGCACTGCTGGCCGCTCTCCTTGCTGCCGGCCACGCAG
Seq A exon
GTAAGCGTGGGGCGCGCTGGGGGCTCCGGCTCTGCGGGGCTCCGGCTCTGCGGGGCTCCGGCTCTGCGGGGCTCCGGCTCTGCGGGGCTCCGGCTCTGCGGGGCTCCGGCTCTGCGGGGCTCCGGCTCTGCGGGGCTCCGGCTCTGCGGGGCTCCGGCTCTGCGGGGCTCCGGCTCTGCGGGGCTCCGGCTCTGCGGGGCTCCGGCTCTGCGTCCCGGTGCTGCGCGGCTGCGGCGCGGGGGGCCCGCGGCGATGCTCACAGCCGGGGCGTAGGTGTTCTGTTTTACGTACCTCGTGACTCCGAAGTCAGTGCAGCAGGAGAGCTGTCAGATCCCCTCTGCGTTCGGAGCTGGTTCGTTGCAGCCCGCAAACAGCGCGCTTCCCAGTTCGTGTCACTGATATTGCCGGGAGCTGCCCGAAGTCTCGTGCAAGTGGAACTCGTTCTGCTGCCTGCACT
Seq C2 exon
CCAACCCTTGCTGCTCCCTCCCATGTCAGAACAGAGGTGTATGCATGACAACAGGATTTGATCGGTATGAATGTGACTGCACGAGGACGGGCTATTATGGGGAAAACTGTACAACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005069-1-0,2-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000822=EGF=WD(100=82.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGAATTTCAGTAGTTGCGAGGA
R:
TGTACAGTTTTCCCCATAATAGCCC
Band lengths:
214-671
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]