GgaALTD0002376-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000006050 | F1NB14_CHICK
Description
NA
Coordinates
chr5:11503447-11506078:-
Coord C1 exon
chr5:11505978-11506078
Coord A exon
chr5:11505974-11505977
Coord C2 exon
chr5:11503447-11503588
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
TGTTTTTTTTTGGGTTAAAGATT
3' ss Score
5.08
Exon sequences
Seq C1 exon
TTCCCGCCCGGCCCCGCGGGGCTGCCCCTCATCGGCAACATCCACTCCCTGGGCGCGGAGCAGCCGCACGTCTACATGCGGCGCCAGAGCCAGATCCACGG
Seq A exon
GCAG
Seq C2 exon
ATTTTCAGCCTTGATTTGGGAGGTATATCTGCTATTGTGCTGAATGGCTATGATGCAGTGAAAGAATGCCTTGTTCACCAAAGCGAAATTTTTGCAGACAGACCATCTTTTCCTTTGTTTAAGAAGCTGACAAACATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006050-1-1,2-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(7.2=37.9)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATCGGCAACATCCACTCC
R:
ACCTCCCAAATCAAGGCTGAA
Band lengths:
98-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]