GgaALTD0002688-3/3 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000006804 | ODF2L
Description
NA
Coordinates
chr8:16704996-16706303:+
Coord C1 exon
chr8:16704996-16705105
Coord A exon
chr8:16705106-16705512
Coord C2 exon
chr8:16706241-16706303
Length
407 bp
Sequences
Splice sites
5' ss Seq
CTGGTGCGT
5' ss Score
8.29
3' ss Seq
TTCCTGCTCTTGTCTTGCAGATA
3' ss Score
12.72
Exon sequences
Seq C1 exon
AAATGATAATTATTGATACACAGGAGGATTTGCTGGTGAAAGAATTAACAACACTCAAAACCACCAAAAGATTGTTATGGCTTTTACTTCAAACAAGAGAACAGAAACAG
Seq A exon
GTAAGATGATCCAAAGCAATCACTAGCTTCCTGTGGGAGCCAGGGGTCACGTGTCAGTGAATTGCAGGACAGGTTTTGAGTACCTGGACAATGGAAGGAGAGAGGATAGTCCCACAGGGAACTACTTTAAAATAATGGGGATGCAGAGAGATTAAGGAGATGGATGCACCTGGGGAGCCAGGTGGGCTGTGACAGGGTGCAGGAGCTGGTTAGGCACAGGTAGTTCCAGCTGGAAGAGACATGCTTATTTTAAAAGGATTGAAAACAGCTGTTCCAATTCTTGATACGGAGAGCAATATGCTTTGGAGAACAAGCACAGCACATAGTGGTATGTGCTGGAATACTGGGCACAACTTGACTGAAGGATTTGTTCTGCCCTCGTTCCGTGGCTAATAATTTAATTGCTG
Seq C2 exon
ATAGACGGCAAAAACATTGAAGCTTTGATACAGAAGTTAAGTGAAAATGAAACCCACAATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006804-7-11,8-11,9-11-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.095
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]