GgaALTD0002823-1/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000007169 | EPC1
Description
NA
Coordinates
chr2:14064765-14065195:+
Coord C1 exon
chr2:14064765-14064899
Coord A exon
NA
Coord C2 exon
chr2:14064989-14065195
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCAGCAGGT
5' ss Score
-3.47
3' ss Seq
ATACTGGATTTTACATTTAGCCA
3' ss Score
2.8
Exon sequences
Seq C1 exon
TTTGGACGCTGAGCAGCCAGATTATGACATGGATTCAGAAGATGAGGTCTTTGTCAATAAGTTGAAGAAAAGAATGGATATCTCTCCTTTACAATTTGAAGAGATGATAGACCGACTAGAAAAGGGCAGCGGTCA
Seq A exon
NA
Seq C2 exon
CCAGTCAGCCTGCAAGAGGCCAAGCTGCTGCTGAAAGAAGATGATGAATTGATCAGAGAAGTATATGAGTACTGGATTAAAAAGAGGAAAAACTGTCGAGGGCCCTCTCTTATCCCAGCAGTGAAACAAGAGAAGCGAGATGGCTCCAGCACAAATGATCCTTACGTTGCTTTTAGGAGACGAACAGAAAAGATGCAGACGAGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007169-3-4,4-4-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.388 A=NA C2=0.507
Domain overlap (PFAM):
C1:
PF105134=EPL1=PD(30.6=89.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTAGAAAAGGGCAGCGGTC
R:
CCAGTACTCATATACTTCTCTGATCA
Band lengths:
97-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]