GgaALTD0002875-2/4 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000007354 | CIT
Description
citron rho-interacting serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1985]
Coordinates
chr15:9565993-9566508:+
Coord C1 exon
chr15:9565993-9566093
Coord A exon
chr15:9566094-9566274
Coord C2 exon
chr15:9566383-9566508
Length
181 bp
Sequences
Splice sites
5' ss Seq
GTTGTAATA
5' ss Score
-5.88
3' ss Seq
AATGCCTCTCCTTTTTTCAGGTG
3' ss Score
12.17
Exon sequences
Seq C1 exon
GGCCGCGCCTCCCGATTGGCTGAGGGGAGGGCGCGGGGCGCGCTCCGCCGGAAGTGATGGTCACGAGGACACGCCCCGGCCGCGTTCAAACCTGGACGGCG
Seq A exon
GTAAAGTTGGGGCTCGCGCGGCCGGCGCTGAGGGGACGCGAGGCGGGAGTGCGGGTGGCGGTTCCGTGACGCGCAAACAGCGGTGCTCGGGATCTGCCGGGAGGGTTCTGTTCTCCACCTACCGCCGTTCTCAGGAAGCACGATTGTTCCGATGCTCTGAACGCTCTCCGGCCGTCCAGTT
Seq C2 exon
GTGCCCTTTTATACGAGATAGGCTGCTGGGATGTTGAAGTTCAAGCACAGTGCACGCACCATGGCTGACACTGGCCCTGGGGAGCCCATCGCCAGCCGTGCCTCGCGCCTCAATCTGCTCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007354-0-1,1-1,2-1,3-1-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.250
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCGATTGGCTGAGGGG
R:
TGAAAGAGCAGATTGAGGCGC
Band lengths:
218-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]