GgaALTD0003194-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000008088 | ACSL4
Description
NA
Coordinates
chr4:13863826-13883341:+
Coord C1 exon
chr4:13863826-13863926
Coord A exon
chr4:13863927-13864004
Coord C2 exon
chr4:13883295-13883341
Length
78 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TATTTTCTGTTTGAATATAGATT
3' ss Score
6.05
Exon sequences
Seq C1 exon
CCTCCCGCTCTCAGCCATTTTAGCAGCCGGCCGAGCCGCGCTCTCCGCTAGCAGCGCGGGGCCGAAGCCGGGCGGGCCGAGCTGAGCTGAGCTGAGCTGAG
Seq A exon
GTGAGCGCACGCGGCGCAACATAACGGCCGGCGGGGCCGAGGTCGGGCCGCTCCCTGCCCGCTGTCCGGGGGGACGAG
Seq C2 exon
ATTTAACTGACATCGAATAAAACTTGGACATCGCTGTCAGATACCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008088-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCTCTCAGCCATTTTAGCA
R:
AGGTATCTGACAGCGATGTCCA
Band lengths:
143-221
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]