GgaALTD0003645-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000009151 | FCN3
Description
NA
Coordinates
chr17:660415-661059:+
Coord C1 exon
chr17:660415-660450
Coord A exon
chr17:660451-660590
Coord C2 exon
chr17:660935-661059
Length
140 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGG
5' ss Score
5.42
3' ss Seq
TTCCCCACTCTGCTCAAAAGCCA
3' ss Score
1.9
Exon sequences
Seq C1 exon
GAGCAAAAGGAGAGCCAGGATTTCCAGAACCTTTGG
Seq A exon
GTGAGTTTCGTCCTGGGCCTTTTGTGCCACCATCAGCGCTATGGAACAGCACAGCGACGACAGCAAGAAGGCAGAAGCCCTCCATCAGAGGTCAGGACAGGGCCGCAGCAGTAACCAACTCAATGACACCAAAAGGCAGA
Seq C2 exon
CCAGGAACTGCCAAGAGCTGCTGGATAAAGGGAAGATCCTGAGCGGATGGTACACCATCCACCCCCAAGGCTGCAATGCTACCACTGTCTTCTGCGATATGGACACGGATGGTGGAGGATGGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009151-4-5,5-5-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.048
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0139113=Collagen=PD(8.5=11.9),PF0014713=Fibrinogen_C=FE(19.2=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAGCCAGGATTTCCAGA
R:
AATCCATCCTCCACCATCCGT
Band lengths:
154-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]