GgaALTD0003672-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000009215 | PDE11A
Description
NA
Coordinates
chr7:16707248-16710117:+
Coord C1 exon
chr7:16707248-16707337
Coord A exon
chr7:16707338-16707351
Coord C2 exon
chr7:16709977-16710117
Length
14 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
TTCTCTCTCCTTGTATACAGGCT
3' ss Score
8.46
Exon sequences
Seq C1 exon
GTGATGCAGATGTACCTCCCATTCTGTGGGATTGCCATATCCAATGCCCAGCTATTTGCAGCTTCAAGGAAGGAATATGACAGAAGCAGG
Seq A exon
GTGAGTAACAAAAT
Seq C2 exon
GCTTTACTGGAAGTAGTGAATGACCTCTTCGAAGAACAAACTGACTTAGAGAAAATTGTCAAGAAAATTATGCATCGGGCCCAGACTCTTCTCAAGTGTGAACGGTGTTCAGTATTACTTCTGGAAGATATTGAATCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009215-2-2,3-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PD(7.8=40.0)
A:
NA
C2:
PF0159021=GAF=PU(20.3=68.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGCCCAGCTATTTGCAGC
R:
TCAGTTTGTTCTTCGAAGAGGTCA
Band lengths:
93-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]