GgaALTD0003689-2/3 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000009250 | HNRNPA3
Description
NA
Coordinates
chr7:16932400-16933766:-
Coord C1 exon
chr7:16933734-16933766
Coord A exon
chr7:16933674-16933733
Coord C2 exon
chr7:16932400-16932525
Length
60 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGTA
5' ss Score
-1.91
3' ss Seq
ACTTCGTGAATTTATTTCAGGTA
3' ss Score
8
Exon sequences
Seq C1 exon
GTGGTGGAGGACCAGGATATGGAAACCCAGGTG
Seq A exon
GTGGATATGGAGGTGGAGGAGGAGGATATGATGGCTACAATGAAGGAGGCAATTTTGGAG
Seq C2 exon
GTAATTATGGAGGCAGTGGAAACTACAATGACTTTGGTAACTACAGTGGACAGCAGCAGTCCAATTACGGTCCCATGAAAGGTGGTGGCAGTTTTGGTGGTAGAAGTTCAGGCAGTCCCTATGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009250-22-24,23-24,24-24-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.531 A=NA C2=0.773
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF116273=HnRNPA1=PU(94.9=86.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGATATGGAAACCCAGGTG
R:
ACCATAGGGACTGCCTGAACT
Band lengths:
146-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]