GgaALTD0003812-1/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000009513 | METAP1D
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:HGNC Symbol;Acc:HGNC:32583]
Coordinates
chr7:17354722-17355626:-
Coord C1 exon
chr7:17355501-17355626
Coord A exon
NA
Coord C2 exon
chr7:17354722-17354764
Length
0 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
CCTTTCTGTTTTTGTTTCAGTCG
3' ss Score
10.59
Exon sequences
Seq C1 exon
GTTGGCATGACAACTGAAGAAATAGATTCCATTGTTCATCATGAAATAATCAGACGGAATGCCTATCCTTCACCTCTGGGCTATGGAGGTTTTCCAAAATCTGTTTGTACTTCTGTAAACAACGTG
Seq A exon
NA
Seq C2 exon
TCGACCTCTTCAGGATGGAGATATTATCAACATTGATGTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009513-3-4,4-4,5-4-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=FE(21.5=100)
A:
NA
C2:
PF0055719=Peptidase_M24=FE(6.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGAATGCCTATCCTTCACC
R:
TCTCCATCCTGAAGAGGTCGA
Band lengths:
94-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]